PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009053-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 112aa    MW: 12620.1 Da    PI: 5.9854
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009053-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.2e-192296170
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS
             B3  1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70
                   f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr ++++++lt+GW+ Fv+
  NNU_009053-RA 22 FCKTLTASDTSTHGGFSVPRRAAEDYfppldyK-QQRPSQELVAKDLHGVEWKFRHIYRDQPRGHLLTTGWSAFVN 96
                   99****************************963.3445679**********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-311797IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-351896IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-182096No hitNo description
PfamPF023624.5E-172297IPR003340B3 DNA binding domain
SMARTSM010191.5E-622108IPR003340B3 DNA binding domain
PROSITE profilePS508638.55722112IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MEADGEDEEI EGSAKLTTPH MFCKTLTASD TSTHGGFSVP RRAAEDYFPP LDYKQQRPSQ  60
ELVAKDLHGV EWKFRHIYRD QPRGHLLTTG WSAFVNKTLG MLSSFSEVTM GN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-362295158231Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589968.12e-55PREDICTED: auxin response factor 3
SwissprotO236611e-49ARFC_ARATH; Auxin response factor 3
TrEMBLC9E9N32e-57C9E9N3_PETHY; Putative ETTIN protein (Fragment)
STRINGVIT_10s0003g00420.t011e-52(Vitis vinifera)
STRINGPGSC0003DMT4000812821e-52(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.17e-51ARF family protein